Data Source: Sun, W., Liu, Z., Jiang, X. et al. Spatial transcriptomics reveal neuron–astrocyte synergy in long-term memory. Nature 627, 374–381 (2024). https://doi.org/10.1038/s41586-023-07011-6

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Visualization Mode

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Gene Expression

Primary Gene

Expression shown as normalized values

Database Overview

Total Cells Profiled: {{ stats.n_cells.toLocaleString() }}

Experimental Batches: {{ stats.n_batches }}

Annotated Cell Types: {{ stats.n_cell_types }}

Ground Truth Categories: {{ stats.n_ground_truth_types }}

Quantified Genes: {{ stats.n_genes || allGenes.length }}

Interactive Features

Spatial Navigation:

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Both plots synchronize automatically

Analysis Modes:

Cell Type mode: Compare annotation methods
Expression mode: Visualize gene-level patterns
Filter by cell type across all visualizations

{{ cellsData.n_cells.toLocaleString() }} cells

Cell Type: {{ selectedCellType }}

ScMarkerAgent+LLM Annotation

Authors' Annotation

Evidence: {{ selectedCellType }} {{ evidenceData.confidence }} confidence

{{ evidenceData.n_evidence }} literature records

Key Marker Genes

Annotation Rationale

Supporting Literature

No literature evidence found for this cell type in the MyData database (Mouse + Brain filter).

{{ item.gene_symbol }} Original Marker: {{ item.marker }} ({{ item.marker_polarity }})

Cell Type (Original): {{ item.cell_name_orig }} → Cell Type (Standardized): {{ item.cell_name_standardized }}

{{ item.journal }}, {{ item.year }} • {{ item.pmcid }}

Gene (Standardized): {{ item.gene_symbol }} - {{ item.gene_full_name }} • Protein: {{ item.protein_name }}

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